Provided by: libvcflib-tools_1.0.9+dfsg1-3build1_amd64 bug

NAME
       vcfstats


SYNOPSIS
       vcfstats options


DESCRIPTION
       Prints statistics about variants in the input VCF file.


OPTIONS
                  -r, --region          specify a region on which to target the stats, requires a BGZF
                                        compressed file which has been indexed with tabix.  any number of
                                        regions may be specified.
                  -a, --add-info        add the statistics intermediate information to the VCF file,
                                        writing out VCF records instead of summary statistics
                  -t, --add-type        only add the type= field to the info (faster than -a)
                  -l, --no-length-frequency    don't out the indel and mnp length-frequency spectra
                  -m, --match-score N          match score for SW algorithm
                  -x, --mismatch-score N       mismatch score for SW algorithm
                  -o, --gap-open-penalty N     gap open penalty for SW algorithm
                  -e, --gap-extend-penalty N   gap extension penalty for SW algorithm

              Type: statistics


EXIT VALUES
       0      Success

       not 0  Failure


SEE ALSO
       vcflib(1)


OTHER
LICENSE
       Copyright 2011-2023 (C) Erik Garrison and vcflib contributors.  MIT licensed.


AUTHORS
       Erik Garrison and vcflib contributors.