NAME

       EukHighConfidenceFilter - detection of transfer RNA genes in genomic sequence

SYNOPSIS

       EukQualityFilter [options]

DESCRIPTION

       Options   --result   -i   <file>           tRNAscan-SE   output   file  used  as  input  --ss  -s  <file>
       tRNAscan-SE secondary structure file used as input --output -o  <file  path>     Directory  where  output
       files   will   be   written   --prefix  -p  <name>          Prefix  for  output  file  name  --remove  -r
       Remove  filtered  tRNA  hits  (default:  filtered  tRNA  hits  are  only  tagged)  --cmscore1  -c1  <num>
       Domain-specific  model  score cutoff for secondary filtering (default = 50; -1 if not used for filtering)
       --ssscore1 -m1 <num>       Secondary structure score cutoff for secondary filtering (default = 10; -1  if
       not  used  for  filtering)  --isoscore1  -e1 <num>      Isotype-specific model score cutoff for secondary
       filtering (default = 70; -1 if not used for filtering) --isoscore2 -e2 <num>      Isotype-specific  model
       starting  score cutoff for tertiary filtering (default = 70; -1 if not used for filtering) --isomaxscore2
       -x <num>    Maximum isotype-specific model score cutoff for tertiary filtering (default = 95)  --help  -h
       Print this help

AUTHOR

        This manpage was written by Nilesh Patra for the Debian distribution and
        can be used for any other usage of the program.

EukHighConfidenceFilter 2.0.9+ds                    July 2021                         EUKHIGHCONFIDENCEFILTER(1)