fetch_refseq_bacterial_genomes_by_name
visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences
- Provided by: cct (Version: 1:1.0.3-1)
- Report a bug
DESCRIPTION
USAGE:
- fetch_refseq_bacterial_genomes_by_name -n STRING -o DIR
DESCRIPTION:
- Downloads a GenBank record using a partial or complete bacterial species name. The --min and --max options can be used to restrict the size of the returned sequences.
REQUIRED ARGUMENTS:
-n, --name STRING
- Complete or partial name of the bacterial species.
-m, --min INTEGER
- Records with a sequence length shorter than this value will be ignored.
-x, --max INTEGER
- Records with a sequence length longer than this value will be ignored.
-o, --output DIR
- The output directory to download the GenBank file into.
OPTIONAL ARGUMENTS:
-h, --help
- Show this message.
EXAMPLE:
- fetch_refseq_bacterial_genomes_by_name -n 'Escherichia*' -o my_project/comparison_genomes
AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.