NAME

       ktImportMGRAST - explore hierarchical metagenomic data with zoomable pie charts

DESCRIPTION

       Creates a Krona chart from MG-RAST organism or functional analyses.

       ktImportMGRAST \

              [options] \ mgrast_table_1[,name_1] \ [mgrast_table_2[,name_2]] \ ...

       mgrast_table
              A  table  exported  from  MG-RAST.  It can be from organism or functional analysis, but all tables
              being imported should be consistent. By default, separate datasets will be created for each  input
              (see [-c]).

       name   A name to show in the list of datasets in the Krona chart (if multiple input files are present and
              [-c] is not specified). By default, the basename of the file will be used.

       [-o <string>]
              Output file name. [Default: 'mg-rast.krona.html']

       [-n <string>]
              Name of the highest level. [Default: 'all']

       [-c]   Combine data from each file, rather than creating separate datasets within the chart.

       [-d <integer>]
              Maximum depth of wedges to include in the chart.

       [-x <integer>]
              Hue (0-360) for "bad" scores. [Default: '0']

       [-y <integer>]
              Hue (0-360) for "good" scores. [Default: '120']

       [-p]   Use percent identity for average scores instead of log[10] e-value.

       [-u <string>]
              URL   of   Krona   resources   to   use   instead   of   bundling   them   with  the  chart  (e.g.
              "http://krona.sourceforge.net"). Reduces size of charts and allows updates, though charts will not
              work without access to this URL.

ktImportMGRAST 2.8                                  June 2021                                  KTIMPORTMGRAST(1)