NAME

       tree-mean-lengths - Compute the mean lengths for branches in the given topology.

SYNOPSIS

       tree-mean-lengths tree-file < in-file

DESCRIPTION

       Compute the mean lengths for branches in the given topology.

ALLOWED OPTIONS:

       -h, –help
              produce help message

       –tree arg
              tree to re-root

       -s arg (=0), –skip arg (=0)
              number of tree samples to skip

       -u arg, –until arg
              Read until this number of trees.

       –prune arg
              Comma-separated taxa to remove

       -x arg (=1), –subsample arg (=1)
              factor by which to subsample

       –var   report standard deviation of branch lengths instead of mean

       –no-node-lengths
              ignore branches not in the specified topology

       –safe  Don’t die if no trees match the topology

       –drop-partial
              Remove partial branches

       –seed arg
              random seed

       -V, –verbose
              Output more log messages on stderr.

REPORTING BUGS:

       BAli-Phy online help: http://www.bali-phy.org/docs.php.

       Please send bug reports to bali-phy-users@googlegroups.com.

AUTHORS

       Benjamin Redelings.

                                                    Feb 2018                                tree-mean-lengths(1)