Provided by: seqan-needle_1.0.3+ds-1_amd64 
NAME
needle -
DESCRIPTION
Needle allows you to build an Interleaved Bloom Filter (IBF) with the command ibf or estimate the
expression of transcripts with the command estimate.
SUBCOMMANDS
This program must be invoked with one of the following subcommands:
- count
- delete
- estimate
- genome
- ibf
- ibfmin
- insert
- insertmin
- minimiser
See the respective help page for further details (e.g. by calling needle count -h).
The following options below belong to the top-level parser and need to be specified before the subcommand
key word. Every argument after the subcommand key word is passed on to the corresponding sub-parser.
OPTIONS
Basic options:
-h, --help
Prints the help page.
-hh, --advanced-help
Prints the help page including advanced options.
--version
Prints the version information.
--copyright
Prints the copyright/license information.
--export-help (std::string)
Export the help page information. Value must be one of [html, man].
VERSION
Last update: 2024-11-07
needle version: 1.0.3
SeqAn version: 3.3.0
URL
https://github.com/seqan/needle
LEGAL
needle Copyright: BSD 3-Clause License
Author: Mitra Darvish
SeqAn Copyright: 2006-2023 Knut Reinert, FU-Berlin; released under the 3-clause BSDL.
In your academic works please cite: Needle: a fast and space-efficient prefilter for estimating the
quantification of very large collections of expression experiments; Mitra Darvish, Enrico Seiler, Svenja
Mehringer, René Rahn, and Knut Reinert; Bioinformatics, Volume 38, Issue 17, 1 September 2022, Pages
4100-4108. doi: https://doi.org/10.1093/bioinformatics/btac492
For full copyright and/or warranty information see --copyright.
needle 1.0.3 2024-11-07 NEEDLE(1)