NAME

       tff_convert_dsi_studio.py - fix DSI-Studio TRK file

DESCRIPTION

       usage: tff_convert_dsi_studio.py [-h] [--remove_invalid | --keep_invalid] [-f]

              IN_DSI_TRACTOGRAM IN_DSI_FA OUT_TRACTOGRAM

       This  script  is  made  to  fix DSI-Studio TRK file (unknown space/convention) to make it compatible with
       TrackVis, MI-Brain, Dipy Horizon (Stateful Tractogram).

       The script either make it match with an anatomy from DSI-Studio.

       This script was tested on various datasets and worked on all of them. However, always verify the  results
       and if a specific case does not work. Open an issue on the Scilpy GitHub repository.

       WARNING:  This script is still experimental, DSI-Studio evolves quickly and results may vary depending on
       the data itself as well as DSI-studio version.

   positional arguments:
       IN_DSI_TRACTOGRAM
              Path of the input tractogram file from DSI studio (.trk).

       IN_DSI_FA
              Path of the input FA from DSI Studio (.nii.gz).

       OUT_TRACTOGRAM
              Path of the output tractogram file.

   options:
       -h, --help
              show this help message and exit

       --remove_invalid
              Remove the streamlines landing out of the bounding box.

       --keep_invalid
              Keep the streamlines landing out of the bounding box.

       -f     Force overwriting of the output files.

tff_convert_dsi_studio.py 0.3                       July 2024                       TFF_CONVERT_DSI_STUDIO.PY(1)