truspades
truSPAdes genome assembler
- Provided by: spades (Version: 4.0.0+really3.15.5+dfsg-1)
- Report a bug
SYNOPSIS
truspades [options] -o <output_dir>
DESCRIPTION
truspades is the main executable for the truSPAdes software. It assembles genomic reads given to it and places the resulting assembly in <output_dir>.
OPTIONS
Basic options
-o <output_dir>
directory to store all the resulting files
(required)
--test
runs truSPAdes on toy dataset
-h/--help
prints this usage message
-t/--threads <int>
number of threads
--continue
continue interrupted launch
--construct-dataset
parse dataset from input folder
Input options
--input-dir <directory>
directory with input data. Note that the directory should
contain only files with reads. This option can be used several times to
provide several input directories.
--dataset <file>:w: file with dataset description