Provided by: libvcflib-tools_1.0.12+dfsg-1_amd64 bug

NAME
       vcfgenotypes


SYNOPSIS
       vcfgenotypes


DESCRIPTION
       Report  the  genotypes for each sample, for each variant in the VCF.  Convert the numerical represenation
       of genotypes provided by the GT field to a human-readable genotype format.


OPTIONS
EXAMPLES
              Example:

                    **vcfgenotypes** samples/sample.vcf

              19      111     A       C       A,C     NA00001:A/A     NA00002:A/A     NA00003:A/C
              19      112     A       G       A,G     NA00001:A/A     NA00002:A/A     NA00003:A/G
              20      14370   G       A       G,A     NA00001:G/G     NA00002:G/A     NA00003:A/A
              20      17330   T       A       T,A     NA00001:T/T     NA00002:T/A     NA00003:T/T
              20      1110696 A       G,T     A,G,T   NA00001:G/T     NA00002:G/T     NA00003:T/T
              20      1230237 T       .       T,.     NA00001:T/T     NA00002:T/T     NA00003:T/T
              20      1234567 G       GA,GAC  G,GA,GAC        NA00001:G/GA    NA00002:G/GAC   NA00003:GA/GA
              20      1235237 T       .       T,.     NA00001:T/T     NA00002:T/T     NA00003:./.
              X       10      AC      A,ATG   AC,A,ATG        NA00001:AC      NA00002:AC/A    NA00003:AC/ATG

              Type: statistics


EXIT VALUES
       0      Success

       not 0  Failure


SEE ALSO
       vcflib(1)


OTHER
LICENSE
       Copyright 2011-2024 (C) Erik Garrison and vcflib contributors.  MIT licensed.   Copyright  2020-2024  (C)
       Pjotr Prins.


AUTHORS
       Erik Garrison and vcflib contributors.

vcfgenotypes (vcflib)                                                                            VCFGENOTYPES(1)