Ubuntu Manpages

AlignRecords.py

Repertoire clonal assignment toolkit (Python 3)

usage: AlignRecords.py [--version] [-h] ...

Multiple aligns sequence fields

show program's version number and exit
show this help message and exit

alignment method
Multiple aligns sequence columns within groups and across rows using MUSCLE.
Multiple aligns sequence fields within rows using MUSCLE
Multiple aligns sequence groups across both columns and rows using MUSCLE.

align-pass
database with multiple aligned sequences.
align-fail
database with records failing alignment.

sequence_id, v_call, j_call <field>
user specified sequence fields to align.

<field>_align


This manpage was written by Nilesh Patra for the Debian distribution and
can be used for any other usage of the program.