ecofind
searching for taxonomic and rank and taxonomy id for given regular expression patterns
- Provided by: ecopcr (Version: 1.0.1+dfsg-5build1)
- Report a bug
DESCRIPTION
ecoPCR is an electronic PCR software developed by LECA and Helix-Project. It helps to estimate Barcode primers quality.
This program belongs to the exoPCR package.
SYNOPSIS
ecofind [options] <patterns>
OPTIONS
- -a : [A]ll enable the search on all alternative names and not only scientific names.
- -d : [D]atabase containing the taxonomy.
- To match the expected format, the database has to be formatted first by the ecoPCRFormat.py program located in the tools directory. Write the database radical without any extension.
- -h : [H]elp - print <this> help
- -l : [L]ist all taxonomic rank available for -r option
- -P : [P]ath : add a column containing the full path for each displayed taxon
- -p : [P]arents : specifying this option displays all parental tree's information for the given taxid.
- -r : [R]estrict to given taxonomic rank
- -s : [S]ons: specifying this option displays all subtree's information for the given taxid.
- -P : Display taxonomic [P]ath as supplementary column in output
- arguments:
- <taxon> name pattern bearing regular expressions
SEE ALSO
http://www.grenoble.prabi.fr/trac/ecoPCR/