NAME

       lefse_plot_cladogram.py - determine features of organisms, clades, taxonomic units, genes

DESCRIPTION

       usage: lefse_plot_cladogram.py [-h] [--clade_sep CLADE_SEP]

       [--max_lev MAX_LEV]
              [--max_point_size    MAX_POINT_SIZE]    [--min_point_size    MIN_POINT_SIZE]   [--point_edge_width
              MARKEREDGEWIDTH] [--siblings_connector_width SIBLINGS_CONNECTOR_WIDTH]  [--parents_connector_width
              PARENTS_CONNECTOR_WIDTH]      [--radial_start_lev      RADIAL_START_LEV]      [--labeled_start_lev
              LABELED_START_LEV]   [--labeled_stop_lev   LABELED_STOP_LEV]   [--abrv_start_lev   ABRV_START_LEV]
              [--abrv_stop_lev    ABRV_STOP_LEV]    [--expand_void_lev    EXPAND_VOID_LEV]   [--class_legend_vis
              CLASS_LEGEND_VIS]  [--colored_connector  COLORED_CONNECTORS]  [--alpha  ALPHA]   [--title   TITLE]
              [--sub_clade    SUB_CLADE]   [--title_font_size   TITLE_FONT_SIZE]   [--right_space_prop   R_PROP]
              [--left_space_prop  L_PROP]   [--label_font_size   LABEL_FONT_SIZE]   [--background_color   {k,w}]
              [--colored_labels  {0,1}]  [--class_legend_font_size CLASS_LEGEND_FONT_SIZE] [--dpi DPI] [--format
              {png,svg,pdf}] [--all_feats ALL_FEATS] INPUT_FILE OUTPUT_FILE

       Cladoplot

   positional arguments:
       INPUT_FILE
              tab delimited input file

       OUTPUT_FILE
              the file for the output image

   optional arguments:
       -h, --help
              show this help message and exit

       --clade_sep CLADE_SEP

       --max_lev MAX_LEV

       --max_point_size MAX_POINT_SIZE

       --min_point_size MIN_POINT_SIZE

       --point_edge_width MARKEREDGEWIDTH

       --siblings_connector_width SIBLINGS_CONNECTOR_WIDTH

       --parents_connector_width PARENTS_CONNECTOR_WIDTH

       --radial_start_lev RADIAL_START_LEV

       --labeled_start_lev LABELED_START_LEV

       --labeled_stop_lev LABELED_STOP_LEV

       --abrv_start_lev ABRV_START_LEV

       --abrv_stop_lev ABRV_STOP_LEV

       --expand_void_lev EXPAND_VOID_LEV

       --class_legend_vis CLASS_LEGEND_VIS

       --colored_connector COLORED_CONNECTORS

       --alpha ALPHA

       --title TITLE

       --sub_clade SUB_CLADE

       --title_font_size TITLE_FONT_SIZE

       --right_space_prop R_PROP

       --left_space_prop L_PROP

       --label_font_size LABEL_FONT_SIZE

       --background_color {k,w}
              set the color of the background

       --colored_labels {0,1}
              draw the label with class color (1) or in black (0)

       --class_legend_font_size CLASS_LEGEND_FONT_SIZE

       --dpi DPI

       --format {png,svg,pdf}
              the format for the output file

       --all_feats ALL_FEATS

AUTHOR

       This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage
       of the program.

lefse_plot_cladogram.py 1.1.2                    September 2021                       LEFSE_PLOT_CLADOGRAM.PY(1)