NAME

       qual_trim.py - Perform quality trimming for single-end reads.

DESCRIPTION

       usage: qual_trim.py [-h] [-b BASE] [-p PROB] [-q SCORE] [-l BP] [--illumina5]

       [--solexa]
              FASTQ

       Perform quality trimming for single-end reads.

   positional arguments:
       FASTQ  including stdin or compressed file {zip,gz,tar,bz}

   optional arguments:
       -h, --help
              show this help message and exit

       -b BASE
              ASCII-encoded quality offset, e.g. 33 or 64 (default: 33)

       -p PROB
              error probability cutoff (default: 0.1)

       -q SCORE
              quality score cutoff (default: '-p 0.1')

       -l BP  minimum read length in bp (default: 16)

       --illumina5
              Illumina 1.5+ encoding marked with 'B'

       --solexa
              Solexa encoding

AUTHOR

        This manpage was written by Andreas Tille for the Debian distribution and
        can be used for any other usage of the program.

qual_trim.py 1.1                                   March 2020                                    QUAL_TRIM.PY(1)