sfepy-run

SYNOPSIS

sfepy-run [-h] [–version] [-a {bvp,homogen,bvp-mM,evp,phonon}]: [–debug] [–debug-mpi] [-c “key : value, …”] [-O “key : value, …”] [-d “key : value, …”] [-o filename] [–format format] [–save-restart mode] [–load-restart filename] [–log file] [-q] [–save-ebc] [–save-ebc-nodes] [–save-regions] [–save-regions-as-groups] [–save-field-meshes] [–solve-not] [–phonon-band-gaps] [–phonon-dispersion] [–phonon-plot] [–phonon-phase-velocity] [–list what] [filename_in]

DESCRIPTION

Solve partial differential equations given in a SfePy problem definition file.

Example problem definition files can be found in sfepy/examples/ directory of the SfePy top-level directory.

In the examples below it is supposed that sfepy is installed. When using the in-place build, replace sfepy-run by python3 sfepy/scripts/simple.py.

The supported application kinds (–app option) are:

bvp - boundary value problem. Example:

sfepy-run sfepy/examples/diffusion/poisson.py

homogen - calculation of local microscopic problems (correctors) and homogenized coefficients. Example:

sfepy-run sfepy/examples/homogenization/perfusion_micro.py

bvp-mM - micro-macro boundary value problem. Solve a coupled two-scale problem in parallel using MPI. One computational node is solving a macroscopic equation while the others are solving local microscopic problems and homogenized coefficients. The –app option is required in this case. Example:

mpiexec -n 4 sfepy-run --app=bvp-mM --debug-mpi sfepy/examples/homogenization/nonlinear_hyperelastic_mM.py

evp - eigenvalue problem. Example:

sfepy-run sfepy/examples/quantum/well.py

phonon - phononic band gaps. Example:

sfepy-run sfepy/examples/phononic/band_gaps.py --phonon-plot

Both normal and parametric study runs are supported. A parametric study allows repeated runs for varying some of the simulation parameters - see sfepy/examples/diffusion/poisson_parametric_study.py file.

POSITIONAL ARGUMENTS

filename_in         SfePy problem description file

OPTIONAL ARGUMENTS

-h, --help: show this help message and exit
--version: show program’s version number and exit

-a {bvp,homogen,bvp-mM,evp,phonon}, –app {bvp,homogen,bvp-mM,evp,phonon}: override application kind, normally determined automatically. The supported kinds are: bvp (boundary value problem), homogen (correctors, homogenized coefficients), bvp-mM (micro-macro boundary value problem, homogenized coefficients computed in parallel using MPI), evp (eigenvalue problem), phonon (phononic band gaps)

--debug: automatically start debugger when an exception is raised
--debug-mpi: log MPI communication (mM mode only)

-c “key (value, …”, –conf “key) (value, …”): override problem description file items, written as python dictionary without surrounding braces
-O “key (value, …”, –options “key) (value, …”): override options item of problem description, written as python dictionary without surrounding braces
-d “key (value, …”, –define “key) (value, …”): pass given arguments written as python dictionary without surrounding braces to define() function of problem description file

-o filename

basename of output file(s) [default: <basename of input file>]

--format format

output file format, one of: {vtk, h5} [default: vtk]

--save-restart mode

if given, save restart files according to the given mode.

--load-restart filename

if given, load the given restart file

--log file

log all messages to specified file (existing file will be overwritten!)

-q, --quiet

do not print any messages to screen

--save-ebc

save a zero solution with applied EBCs (Dirichlet boundary conditions)

--save-ebc-nodes

save a zero solution with added non-zeros in EBC (Dirichlet boundary conditions) nodes - scalar variables are shown using colors, vector variables using arrows with non-zero components corresponding to constrained components

--save-regions

save problem regions as meshes

--save-regions-as-groups

save problem regions in a single mesh but mark them by using different element/node group numbers

--save-field-meshes

save meshes of problem fields (with extra DOF nodes)

--solve-not