NAME

       bowtie-inspect - extracts information from a bowtie index

SYNOPSIS

       bowtie-inspect [options]* <ebwt_base>

DESCRIPTION

       <ebwt_base>
              ebwt filename minus trailing .1.ebwt/.2.ebwt

              By  default,  prints  FASTA records of the indexed nucleotide sequences to standard out.  With -n,
              just prints names.  With -s, just prints a summary of the index parameters  and  sequences.   With
              -e, preserves colors if applicable.

OPTIONS

       -a/--across <int>
              Number of characters across in FASTA output (default: 60)

       -n/--names
              Print reference sequence names only

       -s/--summary
              Print summary incl. ref names, lengths, index properties

       -e/--ebwt-ref
              Reconstruct reference from ebwt (slow, preserves colors)

       -v/--verbose
              Verbose output (for debugging)

       -h/--help
              print detailed description of tool and its options

       --help print this usage message

       64-bit  Built  on  batsu Thu May 30 11:17:56 UTC 2013 Compiler: gcc version 4.8.0 (Ubuntu 4.8.0-8ubuntu1)
       Options:     -O3       -Wl,--hash-style=both     -D_FORTIFY_SOURCE=2     -g     -O2     -fstack-protector
       --param=ssp-buffer-size=4      -Wformat     -Werror=format-security      -g     -O2     -fstack-protector
       --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -Wl,-Bsymbolic-functions -Wl,-z,relro  Sizeof
       {int, long, long long, void*, size_t, off_t}: {4, 8, 8, 8, 8, 8}

bowtie-inspect version 1.0.0                        May 2013                                   BOWTIE-INSPECT(1)