NAME

       bp_mrtrans - implement a transformer of alignments from protein to mrna coordinates

SYNOPSIS

       Usage:
         bp_mrtrans -i inputfile -o outputfile [-if input format] [-of output format] [-s cDNA
       sequence database]  [-sf cDNA sequence format] [-h]

DESCRIPTION

       This script will convert a protein alignment back into a cDNA.  Loosely based on Bill
       Pearson's mrtrans.

       The options are:

          -o filename          - the output filename [default STDOUT]
          -of format           - output sequence format
                                 (multiple sequence alignment)
                                 [default phylip]
          -i filename          - the input filename [required]
          -if format           - input sequence format
                                 (multiple sequence alignment)
                                 [ default clustalw]
          -s --seqdb filename  - the cDNA sequence database file
          -sf --seqformat      - the cDNA seq db format (flatfile sequence format)
          -h                   - this help menu

AUTHOR

       Jason Stajich, jason-at-bioperl-dot-org