NAME

       search2bsml - Turn SearchIO parseable reports(s) into a BSML report

SYNOPSIS

       Usage:
         search2bsml [-o outputfile] [-f reportformat] [-i inputfilename]  OR file1 file2 ..

DESCRIPTION

       This script will turn a protein Search report (BLASTP, FASTP, SSEARCH, AXT, WABA, SIM4)
       into a BSML File.

       The options are:

          -i infilename        - (optional) inputfilename, will read
                                 either ARGV files or from STDIN
          -o filename          - the output filename [default STDOUT]
          -f format            - search result format (blast, fasta,waba,axt)
                                 (ssearch is fasta format). default is blast.
          -h                   - this help menu

       Additionally specify the filenames you want to process on the command-line.  If no files
       are specified then STDIN input is assumed.  You specify this by doing: search2gff < file1
       file2 file3

AUTHOR

       Jason Stajich, jason-at-bioperl-dot-org