NAME

       bp_split_seq - splits a sequence into equal sized chunks with an optional
                   overlapping range

SYNOPSIS

       bp_split_seq -c 10000 [-o 1000] [-i] -f seq.in

DESCRIPTION

       The script will split sequences into chunks

       Mandatory Options:

         -c  Desired length of the resulting sequences.
         -f  Input file (must be FASTA format).

       Special Options:

         -o  Overlapping range between the resulting sequences.
         -i  Create an index file with the resulting sequence files. This is
             useful if you want to pass this list as input arguments into
             another programs (i.e. CLUSTAL, HMMER, etc.).

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send
       your comments and suggestions preferably to the Bioperl mailing list.  Your participation
       is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their
       resolution. Bug reports can be submitted via the web:

         https://redmine.open-bio.org/projects/bioperl/

AUTHORS

         Ewan Birney E<lt>birney-at-ebi.ac.ukE<gt>
         Mauricio Herrera Cuadra E<lt>mauricio at open-bio.orgE<gt>
         (some enhancements)