Provided by: cluster3_1.52-2_amd64
NAME
cluster3 — Eisen-clustering of microarray data
SYNOPSIS
cluster3 [-f filename] [-l 0|1] [-u jobname] [-g [0..9]] [-e [0..9]] [-m [msca]] [-k number] [-s 0|1] [-x number] [-y number]
OPTIONS
-h--help Show summary of options. -f filename file loding -u jobname Allows you to specify a different name for the output files (default is derived from the input file name) -l 0|1 Specifies whether to log-transform the data (default is 0, no log-transform) -k number Specifies whether to run k-means clustering instead of hierarchical clustering, and the number of clusters k to use (default: 0) -x number Specifies the horizontal dimension of the SOM grid (default: 2) -y number Specifies the vertical dimension of the SOM grid (default: 1) -s 0|1 Specifies whether to calculate an SOM instead of hierarchical clustering (default: 0) -v --version Show version of program. -g [0..9] Specifies the distance measure for gene clustering 0: No gene clustering 1: Uncentered correlation 2: Pearson correlation 3: Uncentered correlation, absolute value 4: Pearson correlation, absolute value 5: Spearman's rank correlation 6: Kendall's tau 7: Euclidean distance 8: Harmonically summed Euclidean distance 9: City-block distance (default: 1) -e [0..9] Specifies the distance measure for microarray clustering 0: No clustering 1: Uncentered correlation 2: Pearson correlation 3: Uncentered correlation, absolute value 4: Pearson correlation, absolute value 5: Spearman's rank correlation 6: Kendall's tau 7: Euclidean distance 8: Harmonically summed Euclidean distance 9: City-block distance (default: 0) -m [msca] Specifies which hierarchical clustering method to use m: Pairwise complete- linkage s: Pairwise single-linkage c: Pairwise centroid-linkage a: Pairwise average- linkage (default: m)
SEE ALSO
mapletree (1), smile (1).
AUTHOR
This manual page was written by Steffen Moeller moeller@pzr.uni-rostock.de for the Debian system (but may be used by others). Permission is granted to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by the Free Software Foundation. On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL. CLUSTER3(1)