NAME

       avg_adm - Average using ADM

SYNOPSIS

       avg_adm [options] list0 [list1 ...]

DESCRIPTION

       Compute  average-shape  average-intensity  images  and  deformation  maps  using an active
       deformation model.

OPTIONS

   Global Toolkit Options (these are shared by all CMTK tools)
       --help
            Write list of basic command line options to standard output.

       --help-all
            Write complete list of basic and advanced command line options to standard output.

       --wiki
            Write list of command line options to standard output in MediaWiki markup.

       --man
            Write man page source in 'nroff' markup to standard output.

       --version
            Write toolkit version to standard output.

       --echo
            Write the current command line to standard output.

       --verbose-level <integer>
            Set verbosity level.

       --verbose, -v
            Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
            Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Main Options
       --label, -l
            Label mode (as opposed to grey)

       --set-padding <float>
            Set padding value in input files [Default: disabled]

       --replace-padding <float>
            Replace padding value in input files [Default: disabled]

       --pad-out <double>, -p <double>
            Padding value for output file [Default: disabled]

       --jacobian, -j
            Average Jacobian determinants of deformations.

       --auto-scale, -a
            Auto-scale image intensities

       --char
            Output is 8 bits, signed [default: automatic]

       --byte
            Output is 8 bits, unsigned

       --short
            Output is 16 bits, signed

       --ushort
            Output is 16 bits, unsigned

       --int
            Output is 32 bits signed

       --float
            Output is 32 bits floating point

       --double
            Output is 64 bits floating point

       --no-scale-model, -S
            Exclude scale from statistical deformation model

       --no-ref-model, -R
            Exclude reference coordinate frame from deformation model

       --no-ref-data, -r
            Exclude reference data from averaging

       --output <string>, -o <string>
            Output file name [FORMAT:]path [Default: NONE]

       --input-warp <string>, -I <string>
            Input file name for average warp [Default: NONE]

       --output-warp <string>, -O <string>
            Output file name for average warp [Default: NONE]

       --with-affine, -A
            Include affine component of first warp in output

       --nn Use nearest neigbor interpolation

       --cubic
            Use tri-cubic interpolation

       --replace-from <string>
            Replace from pattern

       --replace-to <string>
            Replace to pattern

AUTHORS

       Torsten Rohlfing, with contributions from Michael  P.  Hasak,  Greg  Jefferis,  Calvin  R.
       Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

LICENSE

       http://www.fsf.org/licensing/licenses/gpl.html

BUGS

       Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

       CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on
       Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data  Integration  Component.  From
       April  2009  through September 2011, CMTK development and maintenance was supported by the
       NIBIB under Grant EB008381.