Provided by: cmtk_3.0.0-1ubuntu1_amd64
NAME
filter - Filter a volume image
SYNOPSIS
filter [options] input output filter [options] [-s,--studholme] input output average subject img0 [img1...] filter [options] [-R,--rohlfing] input output subject
DESCRIPTION
This tool applies spatial filtering operators, including cnotent-sensitive opersators, based on selective Gaussian kernels.
OPTIONS
Global Toolkit Options (these are shared by all CMTK tools) --help Write list of basic command line options to standard output. --help-all Write complete list of basic and advanced command line options to standard output. --wiki Write list of command line options to standard output in MediaWiki markup. --man Write man page source in 'nroff' markup to standard output. --version Write toolkit version to standard output. --echo Write the current command line to standard output. --verbose-level <integer> Set verbosity level. --verbose, -v Increment verbosity level by 1 (deprecated; supported for backward compatibility). --threads <integer> Set maximum number of parallel threads (for POSIX threads and OpenMP). Main Options --gaussian <float>, -g <float> Gaussian filter width (sigma) [Default: disabled] --radius <float>, -r <float> Filter radius (truncated outside) [Default: 2] --mask <string>, -m <string> Binary mask file name [Default: NONE] --studholme, -s Use Studholme's consistent filtering --bin-width <float>, -b <float> Intensity bin width for consistent filtering [Default: 10] --rohlfing, -R Use Rohlfing's single-image consistent filtering --intensity-gaussian <float>, -G <float> Intensity gaussian sigma for consistent filtering [Default: 0] Image/Transformation Database --db <string> Path to image/transformation database that should be updated with the newly created image. [Default: NONE]
AUTHORS
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko
LICENSE
http://www.fsf.org/licensing/licenses/gpl.html
BUGS
Report bugs at http://nitrc.org/projects/cmtk/
ACKNOWLEDGMENTS
CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September 2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.