NAME

       mk_analyze_hdr - Make Analyze header file

SYNOPSIS

       mk_analyze_hdr [options] [output.nii]

DESCRIPTION

       Make  header  file  according  Analzye  7.5  format  based on user-supplied parameters for
       geometry, data type, orientation, etc.

OPTIONS

   Global Toolkit Options (these are shared by all CMTK tools)
       --help
            Write list of basic command line options to standard output.

       --help-all
            Write complete list of basic and advanced command line options to standard output.

       --wiki
            Write list of command line options to standard output in MediaWiki markup.

       --man
            Write man page source in 'nroff' markup to standard output.

       --version
            Write toolkit version to standard output.

       --echo
            Write the current command line to standard output.

       --verbose-level <integer>
            Set verbosity level.

       --verbose, -v
            Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
            Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Main Options
       --dims <string>, -D <string>
            Set dimensions in voxels

       --voxel <string>, -V <string>
            Set voxel size in [mm]

       --offset <float>, -O <float>
            Binary data file offset [Default: disabled]

       --byte, -b
            8 bits, unsigned (this is the default)

       --char, -c
            8 bits, signed

       --short, -s
            16 bits, signed

       --ushort, -u
            16 bits, unsigned

       --int, -i
            32 bits signed

       --float, -f
            32 bits floating point

       --double, -d
            64 bits floating point

       --big-endian, -B
            Big endian data [This is the default]

       --little-endian, -L
            Little endian data

       --axial
            Set slice orientation to axial (this is the default)

       --axial-flip
            Set slice orientation to reverse axial

       --sagittal
            Set slice orientation to sagittal

       --sagittal-flip
            Set slice orientation to reverse sagittal

       --coronal
            Set slice orientation to corona;

       --coronal-flip
            Set slice orientation to reverse coronal

       --legacy
            Legacy mode; do not write 'SRI1' tag into header

       --SRI1
            Force 'SRI1' tag even if not present in imported header

       --import <string>, -I <string>
            Import data from given header file.  [Default: NONE]

       --description <string>
            Set description string [max. 80 characters] [Default: NONE]

AUTHORS

       Torsten Rohlfing, with contributions from Michael  P.  Hasak,  Greg  Jefferis,  Calvin  R.
       Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

LICENSE

       http://www.fsf.org/licensing/licenses/gpl.html

BUGS

       Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

       CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on
       Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data  Integration  Component.  From
       April  2009  through September 2011, CMTK development and maintenance was supported by the
       NIBIB under Grant EB008381.