Provided by: cmtk_3.0.0-1ubuntu1_amd64
NAME
statistics - Image statistics
SYNOPSIS
statistics [options] ImageFile0 [ImageFile1 ...]
DESCRIPTION
Statistical computations on image pixel intensities, i.e., means and standard deviations
OPTIONS
Global Toolkit Options (these are shared by all CMTK tools) --help Write list of basic command line options to standard output. --help-all Write complete list of basic and advanced command line options to standard output. --wiki Write list of command line options to standard output in MediaWiki markup. --man Write man page source in 'nroff' markup to standard output. --version Write toolkit version to standard output. --echo Write the current command line to standard output. --verbose-level <integer> Set verbosity level. --verbose, -v Increment verbosity level by 1 (deprecated; supported for backward compatibility). --threads <integer> Set maximum number of parallel threads (for POSIX threads and OpenMP). Main Options --label, -l Interpret voxel values as labels --gray, -g Interpret voxel values as gray values (default) [This is the default] --log, -L Apply log() function to data --exp, -e Apply exp() function to data --num-bins <integer>, -n <integer> Number of histogram bins. [Default: 256] --column, -C Write statistics in column format rather than line format. --e-notation, -E Write floating point numbers in #e# notation (i.e., 1e-3 instead of 0.001) --mask <string>, -m <string> Analyze region based on binary mask file [Default: disabled] --Mask <string>, -M <string> Analyze regions separately based on mask file (label field). [Default: NONE] --mask-output-all-up-to <integer> Output results for all mask values up to given value, even such that do not actually appear in the mask. [Default: 0] --percentile <double>, -p <double> Add value to list of percentile to compute.
AUTHORS
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko
LICENSE
http://www.fsf.org/licensing/licenses/gpl.html
BUGS
Report bugs at http://nitrc.org/projects/cmtk/
ACKNOWLEDGMENTS
CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September 2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.