NAME

       stream_pixels - Stream pixel data from one or more images to Standard Output.

SYNOPSIS

       stream_pixels ImagePaths

DESCRIPTION

       This  tool  reads  one  or  more  images and writes all their pixels to standard output in
       binary  form.  Optionally,  each  image  can  be  reoriented  to  a  specified  anatomical
       orientation  and/or  converted  to  a different data type. This is useful for piping image
       data through a pipeline, e.g., the Camino DTI toolkit.

OPTIONS

   Global Toolkit Options (these are shared by all CMTK tools)
       --help
            Write list of basic command line options to standard output.

       --help-all
            Write complete list of basic and advanced command line options to standard output.

       --wiki
            Write list of command line options to standard output in MediaWiki markup.

       --man
            Write man page source in 'nroff' markup to standard output.

       --version
            Write toolkit version to standard output.

       --echo
            Write the current command line to standard output.

       --verbose-level <integer>
            Set verbosity level.

       --verbose, -v
            Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
            Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Main Options
       --reorient <string>
            Reorient all images to anatomy-based standard  orientation,  e.g.,  RAS  or  LPS  for
            axial. Default: no reorientation.  [Default: NONE]

       --change-endian
            Change endianness. Default: native endianness.

       --convert
            Convert  data  to new scalar type. Default: no conversion.  Supported values: "char",
            "byte", "short", "ushort", "int", "uint",  "float",  "double",  or  use  one  of  the
            following:

            --char
                 8 bits, signed integer

            --byte
                 8 bits, unsigned integer

            --short
                 16 bits, signed integer

            --ushort
                 16 bits, unsigned integer

            --int
                 32 bits, signed integer

            --uint
                 32 bits, unsigned integer

            --float
                 32-bits, single-precision floating point

            --double
                 64 bits, double-precision floating point

AUTHORS

       Torsten  Rohlfing,  with  contributions  from  Michael  P. Hasak, Greg Jefferis, Calvin R.
       Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

LICENSE

       http://www.fsf.org/licensing/licenses/gpl.html

BUGS

       Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

       CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on
       Alcohol  and  Neurodevelopment  in Adolescence (N-CANDA): Data Integration Component. From
       April 2009 through September 2011, CMTK development and maintenance was supported  by  the
       NIBIB under Grant EB008381.