NAME

       einverted - Finds inverted repeats in nucleotide sequences

SYNOPSIS

       einverted -sequence seqall -gap integer -threshold integer -match integer
                 -mismatch integer [-maxrepeat integer] -outfile outfile -outseq seqout

       einverted -help

DESCRIPTION

       einverted is a command line program from EMBOSS (“the European Molecular Biology Open
       Software Suite”). It is part of the "Nucleic:Repeats,Nucleic:2D structure" command
       group(s).

OPTIONS

   Input section
       -sequence seqall

   Required section
       -gap integer
           Default value: 12

       -threshold integer
           Default value: 50

       -match integer
           Default value: 3

       -mismatch integer
           Default value: -4

   Additional section
       -maxrepeat integer
           Maximum separation between the start of repeat and the end of the inverted repeat.
           Default value: 2000

   Output section
       -outfile outfile

       -outseq seqout
           The sequence of the inverted repeat regions without gap characters.

BUGS

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or
       directly to the EMBOSS developers
       (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

       einverted is fully documented via the tfm(1) system.

AUTHOR

       Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
           Wrote the script used to autogenerate this manual page.

COPYRIGHT

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package.
       It can be redistributed under the same terms as EMBOSS itself.