NAME

       fastx_trimmer - FASTA/Q Trimmer

DESCRIPTION

       usage:  fastx_trimmer  [-h]  [-f  N]  [-l  N] [-t N] [-m MINLEN] [-z] [-v] [-i INFILE] [-o
       OUTFILE] Part of FASTX Toolkit 0.0.14 by A. Gordon (assafgordon@gmail.com)

       [-h]   = This helpful help screen.

       [-f N] = First base to keep. Default is 1 (=first base).

       [-l N] = Last base to keep. Default is entire read.

       [-t N] = Trim N nucleotides from the end of the read.

       '-t'   can not be used with '-l' and '-f'.

       [-m MINLEN]
              = With [-t], discard reads shorter than MINLEN.

       [-z]   = Compress output with GZIP.

       [-i INFILE]
              = FASTA/Q input file. default is STDIN.

              [-o OUTFILE] = FASTA/Q output file. default is STDOUT.

SEE ALSO

       The quality of  this  automatically  generated  manpage  might  be  insufficient.   It  is
       suggested to visit

              http://hannonlab.cshl.edu/fastx_toolkit/commandline.html

       to get a better layout as well as an overview about connected FASTX tools.