Provided by: embassy-phylip_3.69.650-2_amd64
NAME
fdnadist - Nucleic acid sequence Distance Matrix program
SYNOPSIS
fdnadist -sequence seqsetall -method list -gamma list -ncategories integer -rate array -categories properties [-weights properties] -gammacoefficient float -invarfrac float -ttratio float -freqsfrom toggle -basefreq array [-lower boolean] [-humanreadable boolean] -outfile outfile [-printdata boolean] [-progress boolean] fdnadist -help
DESCRIPTION
fdnadist is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Phylogeny:Molecular sequence" command group(s).
OPTIONS
Input section -sequence seqsetall File containing one or more sequence alignments -method list Default value: F84 distance model -gamma list Default value: No distribution parameters used -ncategories integer Default value: 1 -rate array Default value: 1.0 -categories properties File of substitution rate categories -weights properties Additional section -gammacoefficient float Default value: 1 -invarfrac float Default value: 0.0 -ttratio float Default value: 2.0 -freqsfrom toggle Default value: Y -basefreq array Default value: 0.25 0.25 0.25 0.25 -lower boolean Default value: N -humanreadable boolean Default value: @($(method)==s?Y:N) Output section -outfile outfile -printdata boolean Default value: N -progress boolean Default value: Y
BUGS
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).
SEE ALSO
fdnadist is fully documented via the tfm(1) system.
AUTHOR
Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> Wrote the script used to autogenerate this manual page.
COPYRIGHT
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.