NAME

       fpenny - Penny algorithm, branch-and-bound

SYNOPSIS

       fpenny -infile discretestates [-weights properties] [-ancfile properties]
              [-mixfile properties] -method list [-outgrno integer] [-howmany integer]
              [-howoften integer] [-simple boolean] [-threshold float] -outfile outfile
              [-trout toggle] -outtreefile outfile [-printdata boolean] [-progress boolean]
              [-treeprint boolean] [-stepbox boolean] [-ancseq boolean]

       fpenny -help

DESCRIPTION

       fpenny is a command line program from EMBOSS (“the European Molecular Biology Open
       Software Suite”). It is part of the "Phylogeny:Discrete characters" command group(s).

OPTIONS

   Input section
       -infile discretestates
           File containing one or more data sets

       -weights properties

       -ancfile properties

       -mixfile properties

   Additional section
       -method list
           Default value: Wagner

       -outgrno integer

       -howmany integer
           Default value: 1000

       -howoften integer
           Default value: 100

       -simple boolean

       -threshold float
           Default value: $(infile.discretesize)

   Output section
       -outfile outfile

       -trout toggle
           Default value: Y

       -outtreefile outfile

       -printdata boolean
           Default value: N

       -progress boolean
           Default value: Y

       -treeprint boolean
           Default value: Y

       -stepbox boolean
           Default value: N

       -ancseq boolean
           Default value: N

BUGS

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or
       directly to the EMBOSS developers
       (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

       fpenny is fully documented via the tfm(1) system.

AUTHOR

       Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
           Wrote the script used to autogenerate this manual page.

COPYRIGHT

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package.
       It can be redistributed under the same terms as EMBOSS itself.