gmt music bmr

NAME

       gmt music bmr - Calculate gene coverages and background mutation rates.

VERSION

       This document describes gmt music bmr version 0.04 (2013-05-25 at 17:45:02)

SYNOPSIS

       gmt music bmr ...

DESCRIPTION

       These tools are part of the MuSiC suite.

SUB-COMMANDS

   GENERAL
       calc-bmr
           Calculates mutation rates given per-gene coverage (from "music bmr calc-covg"), and a
           mutation list

       calc-covg
           Uses calcRoiCovg.c to count covered bases per-gene for each given tumor-normal pair of
           BAMs.

       calc-covg-helper
           Uses calcRoiCovg.c to count covered bases per-gene for a tumor-normal pair of BAMs.

       calc-wig-covg
           Count covered bases per-gene for each given wiggle track format file.

LICENSE

       Copyright (C) 2010-2011 Washington University in St. Louis.

       It is released under the Lesser GNU Public License (LGPL) version 3.  See the associated
       LICENSE file in this distribution.

AUTHORS

        Cyriac Kandoth, Ph.D.

SEE ALSO

       genome-music-bmr-calc-covg(1), genome-music-bmr-calc-bmr(1), genome-music(1), genome(1)