NAME

       gt-compreads-compress - Generates compact encoding for fastq data.

SYNOPSIS

       gt compreads compress [option ...] (-files file [...])

OPTIONS

       -descs
           encode descriptions (default: no)

       -files
           File(s) containing reads.

       -name
           specify base name for HCR to be generated. Only mandatory, if more than one file was given. (default:
           undefined)

       -smap
           file containing alphabet description. If "-smap" is not set, dna alphabet is used. (default:
           undefined)

       -qrange
           specify range of quality values. All values smaller or equal to the lower bound will be converted to
           the lower bound. All values equal or larger than the upper bound will be converted to the upper
           bound. (default: undefined)

       -srate
           sampling rate, set to sensible default depending on sampling method (default: undefined)

       -stype
           type of sampling one of regular - page - none (default: page)

       -help
           display help and exit

       -version
           display version information and exit

AUTHOR

       Report bugs to <gt-users@genometools.org>.

                                                   10/07/2012                              GT-COMPREADS-COMPR(1)