NAME

       gt-compreads-refdecompress - Decodes a given RCR (Reference Compressed Reads).

SYNOPSIS

       gt compreads refdecompress [option ...] (-file file)

OPTIONS

       -v
           be verbose (default: no)

       -qnames
           decode read names, default is to just number them (default: no)

       -ref
           Index file (generated by the gt encseq tool) for reference genome. (default: undefined)

       -rcr
           specify base name of file containing RCR. (default: undefined)

       -name
           specify base name for decoded RCR (suffix will be ".rcr.decoded") (default: undefined)

       -help
           display help and exit

       -version
           display version information and exit

AUTHOR

       Report bugs to <gt-users@genometools.org>.

                                                   10/07/2012                              GT-COMPREADS-REFDE(1)