NAME

       gt-matchtool - Parse match formats and/or invoke matching tools.

SYNOPSIS

       gt matchtool [option ...]

OPTIONS

       -type
           choose match file format: OPENMATCH: open match format, e.g. vmatch BLASTOUT : tabular BLAST output
           (-m 8) BLASTALLP: invoke BLASTALL with blastp BLASTALLN: invoke BLASTALL with blastn BLASTP : invoke
           blastp BLASTN : invoke blastn LAST : invoke LAST SW : use Smith-Waterman (default: OPENMATCH)

       -matchfile
           set input file name (default: undefined)

       -db
           set database file name (default: undefined)

       -swminlen
           set minimum required alignment length (for Smith-Waterman alignment) (default: 10)

       -swmaxedist
           set maximum allowed edit distance (for Smith-Waterman alignment) (default: 0)

       -query
           set query file name (default: undefined)

       -help
           display help and exit

       -version
           display version information and exit

AUTHOR

       Report bugs to <gt-users@genometools.org>.

                                                   10/07/2012                                    GT-MATCHTOOL(1)