Provided by: genometools_1.5.1-2ubuntu1_amd64
NAME
gt-mgth - Metagenomethreader, for predicting genes in metagenomeprojects.
SYNOPSIS
gt mgth [option ...] XML-File Query-FASTA-File Hit-FASTA-File
OPTIONS
-s score for synonymic base exchanges (default: 1.00) -n score for non-synonymic base exchanges (default: -1.00) -b score for blast-hit-end within query sequence (default: -10.00) -q score for stop-codon within querysequence (default: -2.00) -h score for stop-codon within hitsequence (default: -5.00) -l score for leaving a gene on forward/reverse strand or enter a gene on forward/reverse strand (default: -2.00) -p max. span between coding-regions resume as one prediction (default: 400.00) -f max. span between coding-regions in different reading frames resume as coding-regions in the optimal reading-frame (default: 200.00) -c db-name for fcgi-db (default: nucleotide) -o name for resulting output-file (default: output) -k name for the Hit-Sequence-DB (default: nucleotide database) -t true or false if a Hit-FASTA-File exist (default: no) -r format of the output-file (default: 1) -a minimum length of the as-sequence (default: 15) -d minimum percent-value for hit-statistic-output (default: 0.00) -e use of alternative start-codons (default: 1) -m search for homology (default: no) -g testmodus, output without creating date (default: no) -x extend the EGTs to max (default: no) -help display help and exit -version display version information and exit
DESCRIPTION
For detailed information, please refer to the manual of mgth.
AUTHOR
Report bugs to <gt-users@genometools.org>. 10/07/2012 GT-MGTH(1)