NAME

       gt-readjoiner-prefilter - Remove contained and low-quality reads and encode read set in GtEncseq format.

SYNOPSIS

       gt readjoiner prefilter [option ...]

OPTIONS

       -readset
           specify the readset name (default: filename of first input sequence_file)

       -db
           specify a list of input libraries (Fasta/FastQ); for single-end libraries use the filename (which is
           not allowed to contain : symbols); for paired-end libraries with reads interleaved (f,r,f,r,...) in a
           single file use the notation <filename>:<insertlength>[,<stdev>] (stdev may be omitted); for
           paired-end with reads in two files (f, r) use the notation <file_f>:<file_r>:<insertlength>[,<stdev>]

       -v
           be verbose (default: no)

       -q
           suppress standard output messages (default: no)

       -help
           display help for basic options and exit

       -help+
           display help for all options and exit

       -version
           display version information and exit

AUTHOR

       Report bugs to <gt-users@genometools.org>.

                                                   10/07/2012                              GT-READJOINER-PREF(1)