Provided by: genometools_1.5.1-2ubuntu1_amd64
NAME
gt-tallymer-mkindex - Count and index k-mers in the given enhanced suffix array for a fixed value of k.
SYNOPSIS
gt tallymer mkindex [options] -esa suffixerator-index [options]
OPTIONS
-esa specify suffixerator-index (mandatory option) (default: undefined) -mersize Specify the mer size. (default: 20) -minocc Specify the minimum occurrence number for the mers to output/index (default: 0) -maxocc Specify the maximum occurrence number for the mers to output/index (default: 0) -pl specify prefix length for bucket boundary construction recommendation: use without argument; then a reasonable prefix length is automatically determined (default: 0) -indexname store the mers specified by options -maxocc and -minocc in an index (default: undefined) -counts store counts of the mers (default: no) -scan read enhanced suffix array sequentially instead of mapping it to memory (default: no) -v be verbose (default: no) -help display help and exit -version display version information and exit
AUTHOR
Report bugs to <kurtz@zbh.uni-hamburg.de>. 10/07/2012 GT-TALLYMER-MKINDE(1)