NAME

       gt-tallymer-search - Search a set of k-mers in an index constructed by "gt tyr mkindex".

SYNOPSIS

       gt tallymer search [options] -tyr tallymer-index -q queryfile0 [queryfile1..] [options]

OPTIONS

       -tyr
           specify tallymer-index (default: undefined)

       -q
           specify query file names

       -strand
           specify the strand to be searched: use f (for forward strand) or p (for reverse complemented strand)
           or fp (for both); default is f (default: f)

       -output
           specify output flags (qseqnum, qpos, counts, sequence)

       -v
           be verbose (default: no)

       -help
           display help and exit

       -version
           display version information and exit

AUTHOR

       Report bugs to <kurtz@zbh.uni-hamburg.de>.

                                                   10/07/2012                              GT-TALLYMER-SEARCH(1)