NAME

       gt - The GenomeTools (gt) genome analysis system (http://genometools.org).

SYNOPSIS

       gt [option ...] [tool | script] [argument ...]

OPTIONS

       -i
           enter interactive mode after executing tool or script

       -test
           perform unit tests and exit

       -help
           display help and exit

       -version
           display version information and exit

DESCRIPTION

       Tools:

       bed_to_gff3 cds chain2dim chseqids clean compreads congruence convertseq csa dupfeat encseq encseq2spm
       eval extractfeat extractseq featureindex fingerprint genomediff gff3 gff3_to_gtf gff3validator
       gtf_to_gff3 hop id_to_md5 interfeat ltrclustering ltrdigest ltrharvest matchtool matstat md5_to_id merge
       mergefeat mgth mkfeatureindex mkfmindex mmapandread orffinder packedindex prebwt readjoiner repfind
       scriptfilter select seq seqfilter seqids seqmutate seqorder seqstat seqtransform seqtranslate sequniq
       shredder shulengthdist simreads sketch sketch_page splicesiteinfo splitfasta stat suffixerator tagerator
       tallymer uniq uniquesub

       Set the environment variable GT_MEM_BOOKKEEPING=on to enable memory bookkeeping (e.g., like this: env
       GT_MEM_BOOKKEEPING=on gt).

       Set the environment variable GT_ENV_OPTIONS=-spacepeak to show a spacepeak afte r program run. Set the
       environment variable GT_ENV_OPTIONS=-showtime to show processing times for some program parts if
       implemented.

       Combinations are possible. Running the ‘gt’ binary with GT_ENV_OPTIONS=-help shows all possible
       “environment options”)

AUTHOR

       Report bugs to <gt-users@genometools.org>.

                                                   10/07/2012                                              GT(1)