NAME

       kissreads_graph - manual page for kissreads_graph 2.0.5+dfsg

DESCRIPTION

       NAME ./kissreads_g/kissreads_graph, version 1.0.0 Beta - Copyright INRIA - CeCILL License

       -h prints this message and exit

       USAGE       ./kissreads_g/kissreads_graph      input_graph      <readsC1.fasta/fastq[.gz]>
       [<readsC2.fasta/fastq[.gz]> [<readsC3.fasta/fastq[.gz] ...] -M  -t  type  [-k  value]  [-c
       min_coverage] [-d max_substitutions] [-o name] [-h]

       DESCRIPTION ./kissreads_g/kissreads_graph maps the provided reads on the graph With option
       "-t coverage": outputs an equivalent graph removing uncovered edges and adding:

              for each node: the coverage per sample and per position for each edge:  the  number
              of mapped reads per sample using this edge

   With option  -t simplify": outputs the same simplified graph:"
              removing low covered edges (less that min_coverage) duplicating non ambiguous paths
              (and then simplifying simple non branching created paths)

       If -M option is specified, the input is considered as a Mapsembler output - thus  composed
       of multiple independant graphes

       MANDATORY

       -t <type>

              "c" "coverage" "s" "simplify"

       OPTIONS -M: the input is considered as a Mapsembler output

       -o file_name: write obtained graph. Default: standard output

       -k size_seed: will use seeds of length size_seed. Default: 25.

       -c  min_coverage:  Will consider an edge as coherent if coverage (number of reads from all
              sets using this edge) is at least min_coverage. Default: 2

       -d max_substitutions: Will map  a  read  on  the  graph  with  at  most  max_substitutions
              substitutions. Default: 1

SEE ALSO

       The full documentation for kissreads_graph is maintained as a Texinfo manual.  If the info
       and kissreads_graph programs are properly installed at your site, the command

              info kissreads_graph

       should give you access to the complete manual.