Provided by: mia-tools_2.0.13-1_amd64
NAME
mia-2dfluid - Fluid dynamic 2D registration
SYNOPSIS
mia-2dfluid -i <in-image> -r <ref-image> [options]
DESCRIPTION
mia-2dfluid This program is used for non-rigid registration based on fluid dynamics. It uses SSD as the sole registration criterion.
OPTIONS
File-IO -i --in-image=(required) input (model) image to be registered For supported file types see PLUGINS:2dimage/io -r --ref-image=(required) reference image For supported file types see PLUGINS:2dimage/io -o --out= output vector field For supported file types see PLUGINS:2dvf/io -d --deformed-image= deformed registered image For supported file types see PLUGINS:2dimage/io Help & Info -V --verbose=warning verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are: info ‐ Low level messages warning ‐ Warnings error ‐ Report errors fail ‐ Report test failures message ‐ Normal messages fatal ‐ Report only fatal errors --copyright print copyright information -h --help print this help -? --usage print a short help --version print the version number and exit Processing --threads=-1 Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation). Registration parameters -m --mgstart=16 multigrid start size -e --epsilon=0.001 optimization breaking condition --mu=1 elasticity parameter --lambda=1 elasticity parameter --elastic use elastic registration
PLUGINS: 2dimage/io
bmp BMP 2D-image input/output support Recognized file extensions: .BMP, .bmp Supported element types: binary data, unsigned 8 bit, unsigned 16 bit datapool Virtual IO to and from the internal data pool Recognized file extensions: .@ dicom 2D image io for DICOM Recognized file extensions: .DCM, .dcm Supported element types: unsigned 16 bit exr a 2dimage io plugin for OpenEXR images Recognized file extensions: .EXR, .exr Supported element types: unsigned 32 bit, floating point 32 bit jpg a 2dimage io plugin for jpeg gray scale images Recognized file extensions: .JPEG, .JPG, .jpeg, .jpg Supported element types: unsigned 8 bit png a 2dimage io plugin for png images Recognized file extensions: .PNG, .png Supported element types: binary data, unsigned 8 bit, unsigned 16 bit raw RAW 2D-image output support Recognized file extensions: .RAW, .raw Supported element types: binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit tif TIFF 2D-image input/output support Recognized file extensions: .TIF, .TIFF, .tif, .tiff Supported element types: binary data, unsigned 8 bit, unsigned 16 bit, unsigned 32 bit vista a 2dimage io plugin for vista images Recognized file extensions: .V, .VISTA, .v, .vista Supported element types: binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit
PLUGINS: 2dvf/io
datapool Virtual IO to and from the internal data pool Recognized file extensions: .@ exr a 2dvf io plugin for OpenEXR vfs Recognized file extensions: .EXR, .exr Supported element types: unsigned 32 bit, floating point 32 bit vista a 2d vector field io plugin for vista Recognized file extensions: .V, .VF, .v, .vf Supported element types: floating point 32 bit
EXAMPLE
Register image test.v to image ref.v and write the deformation vector field regfield.v. Start registration at the smallest size above 16 pixel. mia-2dfluid -i test.v -r ref.v -o regfield.v -s 16
AUTHOR(s)
Gert Wollny
COPYRIGHT
This software is Copyright (c) 1999‐2013 Leipzig, Germany and Madrid, Spain. It comes with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the option '--copyright'.