Provided by: mia-tools_2.0.13-1_amd64
NAME
mia-3disosurface-from-volume - Extract an ist-surface froma a 3D image.
SYNOPSIS
mia-3disosurface-from-volume -i <in-image> -o <out-image> [options]
DESCRIPTION
mia-3disosurface-from-volume This program is used to extract an iso-surface from the input gray scale image by using marching thetrahedra.
OPTIONS
File-IO -i --in-image=(required) input image For supported file types see PLUGINS:3dimage/io -o --out-image=(required) output mesh For supported file types see PLUGINS:mesh/io Help & Info -V --verbose=warning verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are: info ‐ Low level messages warning ‐ Warnings error ‐ Report errors fail ‐ Report test failures message ‐ Normal messages fatal ‐ Report only fatal errors --copyright print copyright information -h --help print this help -? --usage print a short help --version print the version number and exit Image options -s --iso-value=128 iso-value of iso surface to be extracted -b --bordered put an empty border around the image to ensure a closed surface Mesh options -f --max-faces=-1 maximum number of Faces, -e --max-edges=-1 maximum number of Edges -c --max-cost=0.1 maximum cost for edge collaps -r --ratio=4 ratio of faces(edges) to target number, at which the optimization changes from edge-length to volume-optimized -w --reverse-winding reverse the winding of the triangles in order to make normals point away from the high intensity area Processing --threads=-1 Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).
PLUGINS: 3dimage/io
analyze Analyze 7.5 image Recognized file extensions: .HDR, .hdr Supported element types: unsigned 8 bit, signed 16 bit, signed 32 bit, floating point 32 bit, floating point 64 bit datapool Virtual IO to and from the internal data pool Recognized file extensions: .@ dicom Dicom image series as 3D Recognized file extensions: .DCM, .dcm Supported element types: unsigned 16 bit inria INRIA image Recognized file extensions: .INR, .inr Supported element types: signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit mhd MetaIO 3D image IO using the VTK implementation (experimental). Recognized file extensions: .MHA, .MHD, .mha, .mhd Supported element types: signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit vff VFF Sun raster format Recognized file extensions: .VFF, .vff Supported element types: unsigned 8 bit, signed 16 bit vista Vista 3D Recognized file extensions: .V, .VISTA, .v, .vista Supported element types: binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit vti 3D image VTK-XML in- and output (experimental). Recognized file extensions: .VTI, .vti Supported element types: signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit vtk 3D VTK image legacy in- and output (experimental). Recognized file extensions: .VTK, .VTKIMAGE, .vtk, .vtkimage Supported element types: signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit
PLUGINS: mesh/io
datapool Virtual IO to and from the internal data pool Recognized file extensions: .@ off plugin to load/store some Geomview OFF Files Recognized file extensions: .OFF, .off ply Ply triangle mesh input/output support Recognized file extensions: .PLY, .ply stl STL mesh io plugin Recognized file extensions: .STL, .stl vista Vista/Simbio triangle mesh input/output support Recognized file extensions: .V, .VMESH, .v, .vmesh vtk A subset of VTK mesh in-and output: Triangle meshes are written, and triangle meshes and triangle strips are read. Additional per-vertex attributes are supported: 'normals', 'colors' for three component colors, and 'scale' for a scalar value attached to each vertex. The data is written by the vtkPolyDataWriter in binary format. Recognized file extensions: .VTK, .VTKMESH, .vtk, .vtkmesh
EXAMPLE
Extract the surface corresponding to the value 30 and stop optimizing when the mesh consists of less than 100000 triangles. mia-3disosurface-from-volume -i image.v -o mesh.vmesh -s 30 -f 100000
AUTHOR(s)
Gert Wollny
COPYRIGHT
This software is Copyright (c) 1999‐2013 Leipzig, Germany and Madrid, Spain. It comes with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the option '--copyright'.