Provided by: emboss_6.6.0-1_amd64
NAME
newcpgreport - Identify CpG islands in nucleotide sequence(s)
SYNOPSIS
newcpgreport -sequence seqall -window integer -shift integer -minlen integer -minoe float -minpc float -outfile outfile newcpgreport -help
DESCRIPTION
newcpgreport is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Nucleic:CpG Islands" command group(s).
OPTIONS
Input section -sequence seqall Required section -window integer Default value: 100 -shift integer Default value: 1 -minlen integer Default value: 200 -minoe float Default value: 0.6 -minpc float Default value: 50. Output section -outfile outfile
BUGS
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).
SEE ALSO
newcpgreport is fully documented via the tfm(1) system.
AUTHOR
Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> Wrote the script used to autogenerate this manual page.
COPYRIGHT
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.