NAME

       ngmx - displays a trajectory

       VERSION 4.6.5

SYNOPSIS

       ngmx -f traj.xtc -s topol.tpr -n index.ndx -[no]h -[no]version -nice int -b time -e time -dt time

DESCRIPTION

         ngmx  is  the  GROMACS trajectory viewer. This program reads a trajectory file, a run input file and an
       index file and plots a 3D structure of your molecule on your standard X Window screen. No need for a high
       end graphics workstation, it even works on Monochrome screens.

       The following features have been  implemented:  3D  view,  rotation,  translation  and  scaling  of  your
       molecule(s),  labels  on  atoms,  animation  of trajectories, hardcopy in PostScript format, user defined
       atom-filters runs on MIT-X (real X), open windows and  motif,  user  friendly  menus,  option  to  remove
       periodicity, option to show computational box.

       Some  of  the  more  common X command line options can be used:  -bg,  -fg change colors,  -font fontname
       changes the font.

FILES

       -f traj.xtc Input
        Trajectory: xtc trr trj gro g96 pdb cpt

       -s topol.tpr Input
        Run input file: tpr tpb tpa

       -n index.ndx Input, Opt.
        Index file

OTHER OPTIONS

       -[no]hno
        Print help info and quit

       -[no]versionno
        Print version info and quit

       -nice int 0
        Set the nicelevel

       -b time 0
        First frame (ps) to read from trajectory

       -e time 0
        Last frame (ps) to read from trajectory

       -dt time 0
        Only use frame when t MOD dt = first time (ps)

KNOWN PROBLEMS

       - Balls option does not work

       - Some times dumps core without a good reason

SEE ALSO

       gromacs(7)

       More information about GROMACS is available at <http://www.gromacs.org/>.

                                                 Mon 2 Dec 2013                                          ngmx(1)