NAME

       ngmx - displays a trajectory

       VERSION 4.6.5

SYNOPSIS

       ngmx  -f  traj.xtc -s topol.tpr -n index.ndx -[no]h -[no]version -nice int -b time -e time
       -dt time

DESCRIPTION

        ngmx is the GROMACS trajectory viewer. This program reads a trajectory file, a run  input
       file and an index file and plots a 3D structure of your molecule on your standard X Window
       screen. No need for a high end graphics workstation, it even works on Monochrome screens.

       The following features have been implemented: 3D view, rotation, translation  and  scaling
       of  your  molecule(s),  labels on atoms, animation of trajectories, hardcopy in PostScript
       format, user defined atom-filters runs on MIT-X (real X), open  windows  and  motif,  user
       friendly menus, option to remove periodicity, option to show computational box.

       Some  of  the  more  common  X command line options can be used:  -bg,  -fg change colors,
       -font fontname changes the font.

FILES

       -f traj.xtc Input
        Trajectory: xtc trr trj gro g96 pdb cpt

       -s topol.tpr Input
        Run input file: tpr tpb tpa

       -n index.ndx Input, Opt.
        Index file

OTHER OPTIONS

       -[no]hno
        Print help info and quit

       -[no]versionno
        Print version info and quit

       -nice int 0
        Set the nicelevel

       -b time 0
        First frame (ps) to read from trajectory

       -e time 0
        Last frame (ps) to read from trajectory

       -dt time 0
        Only use frame when t MOD dt = first time (ps)

KNOWN PROBLEMS

       - Balls option does not work

       - Some times dumps core without a good reason

SEE ALSO

       gromacs(7)

       More information about GROMACS is available at <http://www.gromacs.org/>.

                                          Mon 2 Dec 2013                                  ngmx(1)