NAME

       sdf2fps - sdf2fps

DESCRIPTION

       usage: sdf2fps [-h] [--id-tag TAG] [--fp-tag TAG] [--num-bits INT]

              [--errors  {strict,report,ignore}]  [-o  FILENAME]  [--software TEXT] [--type TEXT]
              [--decompress METHOD] [--binary]  [--binary-msb]  [--hex]  [--hex-lsb]  [--hex-msb]
              [--base64]  [--cactvs]  [--daylight]  [--decoder  DECODER]  [--pubchem]  [filenames
              [filenames ...]]

       Extract a fingerprint tag from an SD file and generate FPS fingerprints

   positional arguments:
       filenames
              input SD files (default is stdin)

   optional arguments:
       -h, --help
              show this help message and exit

       --id-tag TAG
              get the record id from TAG instead of the first line of the record

       --fp-tag TAG
              get the fingerprint from tag TAG (required)

       --num-bits INT
              use the first INT bits of the input. Use only when the last 1-7 bits  of  the  last
              byte  are  not  part of the fingerprint. Unexpected errors will occur if these bits
              are not all zero.

       --errors {strict,report,ignore}
              how should structure parse errors be handled?  (default=strict)

       -o FILENAME, --output FILENAME
              save the fingerprints to FILENAME (default=stdout)

       --software TEXT
              use TEXT as the software description

       --type TEXT
              use TEXT as the fingerprint type description

       --decompress METHOD
              use METHOD to decompress the input (default='auto', 'none', 'gzip', 'bzip2')

   Fingerprint decoding options:
       --binary
              Encoded with the characters '0' and '1'. Bit  #0  comes  first.  Example:  00100000
              encodes the value 4

       --binary-msb
              Encoded  with  the  characters  '0'  and  '1'. Bit #0 comes last. Example: 00000100
              encodes the value 4

       --hex  Hex encoded. Bit #0 is the first bit  (1<<0)  of  the  first  byte.  Example:  01f2
              encodes the value \x01\xf2 = 498

       --hex-lsb
              Hex  encoded.  Bit  #0  is  the  eigth  bit (1<<7) of the first byte. Example: 804f
              encodes the value \x01\xf2 = 498

       --hex-msb
              Hex encoded. Bit #0 is the first bit (1<<0) of the last byte. Example: f201 encodes
              the value \x01\xf2 = 498

       --base64
              Base-64  encoded.  Bit  #0 is first bit (1<<0) of first byte. Example: AfI= encodes
              value \x01\xf2 = 498

       --cactvs
              CACTVS encoding, based on base64 and includes a version and bit length

       --daylight
              Daylight encoding, which is is base64 variant

       --decoder DECODER
              import and use the DECODER function to decode the fingerprint

   shortcuts:
       --pubchem
              decode CACTVS substructure keys used in PubChem. Same as  --software=CACTVS/unknown
              --type 'CACTVSE_SCREEN/1.0 extended=2' --fptag=PUBCHEM_CACTVS_SUBSKEYS --cactvs