Provided by: ncbi-tools-bin_6.1.20120620-7_amd64
NAME
trna2sap - convert tRNAscan-SE output to an ASN.1 Seq-annot object
SYNOPSIS
trna2sap [-] [-a] [-c str] [-f str] [-i filename] [-j] [-m str] [-n str] [-o filename] [-p dir] [-r dir] [-s] [-t str] [-u] [-x str]
DESCRIPTION
trna2sap reads a text file produced by tRNAscan-SE and produces a corresponding ASN.1 Seq- annot in the format understood by other NCBI tools.
OPTIONS
A summary of options is included below. - Print usage message -a Add tRNAscan-SE citation -c str Comment -f str Substring Filter -i filename Single Input file (standard input by default) -j Just produce a five-column feature table, à la trna2tbl(1). -m str ReMark -n str Annotation Name (normally “tRNA”). -o filename Single Output file (standard output by default) -p dir Path to files -r dir Path for Results -s Ignore Pseudo tRNAs -t str Annotation Title (normally “tRNAscan-SE”). -u Ignore Undetermined tRNAs -x str File selection suffix with -p (.trna by default).
AUTHOR
The National Center for Biotechnology Information.
SEE ALSO
sequin(1), tbl2asn(1), trna2tbl(1).