NAME

       Bio::Align::StatisticsI - Calculate some statistics for an alignment

SYNOPSIS

       Give standard usage here

DESCRIPTION

       Describe the interface here

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send
       your comments and suggestions preferably to the Bioperl mailing list.  Your participation
       is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will
       be able look at the problem and quickly address it. Please include a thorough description
       of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their
       resolution. Bug reports can be submitted via the web:

         https://redmine.open-bio.org/projects/bioperl/

AUTHOR - Jason Stajich

       Email jason@bioperl.org

APPENDIX

       The rest of the documentation details each of the object methods.  Internal methods are
       usually preceded with a _

   distance
        Title   : distance
        Usage   : my $distance_mat = $stats->distance(-align  => $aln,
                                                      -method => $method);
        Function: Calculates a distance matrix for all pairwise distances of
                  sequences in an alignment.
        Returns : Array ref
        Args    : -align  => Bio::Align::AlignI object
                  -method => String specifying specific distance method
                             (implementing class may assume a default)

   available_distance_methods
        Title   : available_distance_methods
        Usage   : my @methods = $stats->available_distance_methods();
        Function: Enumerates the possible distance methods
        Returns : Array of strings
        Args    : none