NAME

       Bio::AlignIO::nexml - NeXML format sequence alignment input/output stream driver

SYNOPSIS

       Do not use this module directly.  Use it via the Bio::AlignIO class.

DESCRIPTION

       This object can transform Bio::SimpleAlign objects to and from NeXML format. For more
       information on NeXML, visit <http://www.nexml.org>.

FEEDBACK

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will
       be able look at the problem and quickly address it. Please include a thorough description
       of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their
       resolution.  Bug reports can be submitted via the web:

         https://redmine.open-bio.org/projects/bioperl/

AUTHORS

       Chase Miller

CONTRIBUTORS

       Mark Jensen, maj@fortinbras.us Rutger Vos, rutgeraldo@gmail.com

APPENDIX

       The rest of the documentation details each of the object methods. Internal methods are
       usually preceded with a _

   next_aln
        Title   : next_aln
        Usage   : $aln = $stream->next_aln
        Function: returns the next alignment in the stream.
        Returns : Bio::Align::AlignI object - returns 0 on end of file
                       or on error
        Args    :

       See Bio::Align::AlignI

   rewind
        Title   : rewind
        Usage   : $alnio->rewind
        Function: Resets the stream
        Returns : none
        Args    : none

   doc
        Title   : doc
        Usage   : $treeio->doc
        Function: Returns the biophylo nexml document object
        Returns : Bio::Phylo::Project
        Args    : none or Bio::Phylo::Project object

   write_aln
        Title   : write_aln
        Usage   : $stream->write_aln(@aln)
        Function: writes the $aln object into the stream in nexml format
        Returns : 1 for success and 0 for error
        Args    : L<Bio::Align::AlignI> object

       See Bio::Align::AlignI