NAME

       Bio::Chado::NaturalDiversity::Reports - Collection of functions for formatting Chado stock
       related data

SYNOPSIS

         use Bio::Chado::NaturalDiversity::Reports

         my $sreport = Bio::Chado::NaturalDiversity::Reports->new;
         my $data = $sreport->phenotypes_by_trait($phenotypes);

DESCRIPTION

       A collection of functions for formatting Chado stock related data in different data
       structures which can be useful for passing to different programs and software.  Because
       the Chado stock table is the key for storing samples subjected to genotyping and
       phenotyping experiments, it interacts with several other Chado modules, such as
       NaturalDiversity for storing the experiment data, Project for storing the metadata about
       the experiments, Phenotype for the phenotyping values Genotype for the genotyping values.

       This module generates several reports for easier access to such data.

       Note that all data reports heavily rely on the Natural Diversity schema.  The results in
       each report may differ based on how the experiment data is stored in the databse.

       There is no one correct way of loading phenotyping and genotyping data in this module,
       however there are some examples for 'best practice' in the GMOD Wiki
       (http://gmod.org/wiki/Chado_Natural_Diversity_Module)

METHODS

   new
       Make a new Reports object.

   phenotypes_by_trait
         Usage: $self->phenotypes_by_trait($phenotype_rs , { %args } )
         Desc:  generate a report of phenotype values by trait name/accession
         Args:  an arrayref of L<Bio::Chado::Schema::Result::Phenotype::Phenotype> ResultSets
                [optional] list of args to filter the report. Currently supported args are

         Ret:   arrayref of tab delimited data