Provided by: libbio-perl-run-perl_1.6.9-2_all
NAME
Bio::DB::SoapEUtilities::DocSumAdaptor - Handle for Entrez SOAP DocSums
SYNOPSIS
my $fac = Bio::DB::SoapEUtilities->new(); # run a query, returning a DocSumAdaptor my $docs = $fac->esummary( -db => 'taxonomy', -id => 527031 )->run(-auto_adapt=>1); # iterate over docsums while (my $d = $docs->next_docsum) { @available_items = $docsum->item_names; # any available item can be called as an accessor # from the docsum object...watch your case... $sci_name = $d->ScientificName; $taxid = $d->TaxId; }
DESCRIPTION
This adaptor provides an iterator ("next_docsum()") and other convenience functions for parsing NCBI Entrez EUtility "esummary" SOAP results.
FEEDBACK
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Support Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: http://redmine.open-bio.org/projects/bioperl/
AUTHOR - Mark A. Jensen
Email maj -at- fortinbras -dot- us
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ new Title : new Usage : my $obj = new Bio::DB::SoapEUtilities::DocSumAdaptor(); Function: Builds a new Bio::DB::SoapEUtilities::DocSumAdaptor object Returns : an instance of Bio::DB::SoapEUtilities::DocSumAdaptor Args : next_docsum() Title : next_docsum Usage : Function: return the next DocSum from the attached Result Returns : Args : item_names() Title : item_names Usage : @accs = $docsum->item_names Function: Return a list of items accessible from the object Returns : array of scalar strings Args : none