NAME

       Bio::Search::Result::hmmer3Result - DESCRIPTION of Object

SYNOPSIS

       Give standard usage here

DESCRIPTION

       Describe the object here

FEEDBACK

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       your comments and suggestions preferably to the Bioperl mailing list.  Your participation
       is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will
       be able look at the problem and quickly address it. Please include a thorough description
       of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their
       resolution. Bug reports can be submitted via the web:

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AUTHOR - Thomas Sharpton

       Email thomas.sharpton@gmail.com

       Describe contact details here

CONTRIBUTORS

       Additional contributors names and emails here

APPENDIX

       The rest of the documentation details each of the object methods.  Internal methods are
       usually preceded with a _

   new
        Title   : new
        Usage   : my $obj = new Bio::Search::Result::hmmer3Result.pm();
        Function: Builds a new Bio::Search::Result::hmmer3Result.pm object
        Returns : an instance of Bio::Search::Result::hmmer3Result.pm
        Args    : -hmm_name => string, name of hmm file
                  -sequence_file => name of the sequence file

   hmm_name
        Title   : hmm_name
        Usage   : $obj->hmm_name($newval)
        Function: Get/Set the value of hmm_name
        Returns : value of hmm_name
        Args    : newvalue (optional)

   sequence_file
        Title   : sequence_file
        Usage   : $obj->sequence_file($newval)
        Function: Get/Set the value of sequence_file
        Returns : value of sequence_file
        Args    : newvalue (optional)

   next_model
        Title   : next_model
        Usage   : my $domain = $result->next_model
        Function: Returns the next domain - this
                  is an alias for next_hit
        Returns : L<Bio::Search::Hit::HitI> object
        Args    : none

   models
        Title   : models
        Usage   : my @domains = $result->models;
        Function: Returns the list of HMM models seen - this
                  is an alias for hits()
        Returns : Array of L<Bio::Search::Hit::HitI> objects
        Args    : none

   rewind
        Title   : rewind
        Usage   : $result->rewind;
        Function: Allow one to reset the Hit iteration to the beginning
                  Since this is an in-memory implementation
        Returns : none
        Args    : none