NAME

       Bio::SeqIO::chaosxml - chaosxml sequence input/output stream

SYNOPSIS

           #In general you will not want to use this module directly;
           #use the chaosxml format via SeqIO

           $outstream = Bio::SeqIO->new(-file => $filename, -format => 'chaosxml');

           while ( my $seq = $instream->next_seq() ) {
              $outstream->write_seq($seq);
           }

DESCRIPTION

       This object can transform Bio::Seq objects to and from chaos files.

       CURRENTLY WRITE ONLY

       ChaosXML is an XML mapping of the chado relational database; for more information, see
       http://www.fruitfly.org/chaos-xml

       Chaos can have other syntaxes than XML (eg S-Expressions, Indented text)

       See Bio::SeqIO::chaos for a full description

VERY VERY IMPORTANT

       !!!!!!!!!!!CHADO AND CHAOS USE INTERBASE COORDINATES!!!!!!!!!!!!!!!!

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send
       your comments and suggestions preferably to one of the Bioperl mailing lists.  Your
       participation is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will
       be able look at the problem and quickly address it. Please include a thorough description
       of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their
       resolution.  Bug reports can be submitted via the web:

         https://redmine.open-bio.org/projects/bioperl/

AUTHOR - Chris Mungall

       Email cjm@fruitfly.org

APPENDIX

       The rest of the documentation details each of the object methods. Internal methods are
       usually preceded with a _